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Dr Jayakrupakar Nallala

Publications

_{Copyright Notice: Any articles made available for download are for personal use only. Any other use requires prior permission of the author and the copyright holder.}

| 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 |

2023

• Nallala J, Calabrese D, Gosling S, Lips E, Factor R, Hall A, Pinder S, Bouybayoune I, Sawyer E, King L. (2023) Molecular imaging of calcification and soft tissue defines prognosis of DCIS to invasive breast cancer, CANCER RESEARCH, volume 83, no. 7, DOI:10.1158/1538-7445.AM2023-5561. [PDF]
• Gosling SB, Arnold EL, Davies SK, Cross H, Bouybayoune I, Calabrese D, Nallala J, Pinder SE, Fu L, Lips EH. (2023) Microcalcification crystallography as a potential marker of DCIS recurrence, Sci Rep, volume 13, no. 1, DOI:10.1038/s41598-023-33547-8. [PDF]
• Nallala J, Calabrese D, Gosling S, Lips E, Factor R, Hall A, Pinder SE, Bouybayoune I, King L, Marks J. (2023) Abstract P4-02-22: Breast microcalcification chemistry predicts DCIS prognosis, Cancer Research, volume 83, no. 5_Supplement, DOI:10.1158/1538-7445.sabcs22-p4-02-22.

2022

• Bench C, Nallala J, Wang C-C, Sheridan H, Stone N. (2022) Unsupervised segmentation of biomedical hyperspectral image data: tackling high dimensionality with convolutional autoencoders, Biomedical Optics Express, volume 13, no. 12, pages 6373-6373, DOI:10.1364/boe.476233. [PDF]
• Bench C, Nallala J, Wang C-C, Sheridan H, Stone N. (2022) Unsupervised segmentation of biomedical hyperspectral image data: tackling high dimensionality with convolutional autoencoders. [PDF]
• Nallala J, Griggs R, Lloyd GR, Stone N, Shepherd NA. (2022) Infrared Spectroscopic Analysis in the Differentiation of Epithelial Misplacement From Adenocarcinoma in Sigmoid Colonic Adenomatous Polyps, Clinical Pathology, volume 15, pages 2632010X2210889-2632010X2210889, DOI:10.1177/2632010x221088960. [PDF]
• Nallala J, Calabrese D, Gosling S, Hall A, Pinder S, Bouybayoune I, King L, Marks J, Lips E, Lynch T. (2022) Abstract P2-08-07: Predicting DCIS prognosis using infrared and raman spectroscopy of breast calcifications and soft-tissue microstructure, Cancer Research, volume 82, no. 4_Supplement, DOI:10.1158/1538-7445.sabcs21-p2-08-07.
• Gosling S, Calabrese D, Nallala J, Greenwood C, Pinder S, King L, Marks J, Pinto D, Lynch T, Lyburn ID. (2022) A multi-modal exploration of heterogeneous physico-chemical properties of DCIS breast microcalcifications, ANALYST, volume 147, no. 8, pages 1641-1654, DOI:10.1039/d1an01548f. [PDF]

2021

• Popa D, Hopper R, Ali SZ, Cole M, Fan Y, Veigang-Radulescu V-P, Chikkaraddy R, Nallala J, Xing Y, Alexander-Webber J. (2021) A highly stable, nanotube-enhanced, CMOS-MEMS thermal emitter for mid-IR gas sensing, DOI:10.21203/rs.3.rs-772425/v1.
• Popa D, Hopper R, Ali SZ, Cole MT, Fan Y, Veigang-Radulescu VP, Chikkaraddy R, Nallala J, Xing Y, Alexander-Webber J. (2021) A highly stable, nanotube-enhanced, CMOS-MEMS thermal emitter for mid-IR gas sensing, Scientific Reports, volume 11, no. 1, DOI:10.1038/s41598-021-02121-5.
• Kansiz M, Spadea A, Nallala J, Lima C, Muhamadali H, Denbigh J, Lawrence J, Bakir G, Gardner P, Stone N. (2021) Review of life science applications using submicron O-PTIR and simultaneous Raman microscopy: a new paradigm in vibrational spectroscopy, Advanced Chemical Microscopy for Life Science and Translational Medicine 2021, DOI:10.1117/12.2578662.
• Gosling S, Calabrese D, Arnold E, Nallala J, Greenwood C, Stone N, Rogers K. (2021) Breast calcification chemistry as a biomarker for progression of in-situ breast cancer, Bone Reports, volume 14, pages 100787-100787, article no. 100787, DOI:10.1016/j.bonr.2021.100787. [PDF]

2020

• Nallala J, Jeynes C, Saunders S, Smart N, Lloyd G, Riley L, Salmon D, Stone N. (2020) Characterization of colorectal mucus using infrared spectroscopy: a potential target for bowel cancer screening and diagnosis, Laboratory Investigation, volume 100, no. 8, pages 1102-1110, DOI:10.1038/s41374-020-0418-3. [PDF]

2019

• Gosling S, Scott R, Greenwood C, Bouzy P, Nallala J, Lyburn I, Stone N, Rogers K. (2019) Breast Microcalcifications - Novel Biomarkers for Breast Tissue Pathology, BREAST CANCER RESEARCH, volume 21. [PDF]
• Rogers K, Lyburn I, Gosling S, Stone N, Krupakar N. (2019) Breast Cancer: Early diagnosis using materials immortalisation, BREAST CANCER RESEARCH, volume 21. [PDF]
• Stone N. (2019) Calcification Microstructure Reflects Breast Tissue Microenvironment, Journal of Mammary Gland Biology and Neoplasia, DOI:10.1007/s10911-019-09441-3.

2018

• Peñaranda F, Naranjo V, Lloyd GR, Kastl L, Kemper B, Schnekenburger J, Nallala J, Stone N. (2018) Discrimination of skin cancer cells using Fourier transform infrared spectroscopy, Comput Biol Med, volume 100, pages 50-61, DOI:10.1016/j.compbiomed.2018.06.023. [PDF]
• Petersen CR, Prtljaga N, Farries M, Ward J, Napier B, Lloyd GR, Nallala J, Stone N, Bang O. (2018) Mid-infrared fiber-coupled supercontinuum spectroscopic imaging using a tapered chalcogenide photonic crystal fiber, Optical Biopsy XVI: Toward Real-Time Spectroscopic Imaging and Diagnosis, volume 10489.
• Stone N, Petersen CR. (2018) Mid-infrared multispectral tissue imaging using a chalcogenide fiber supercontinuum source, Optics Letters, DOI:10.1364/OL.43.000999.
• Palombo F, Tamagnini F, Jeynes JCG, Mattana S, Swift I, Nallala J, Hancock J, Brown JT, Randall AD, Stone N. (2018) Detection of Aβ plaque-associated astrogliosis in Alzheimer’s disease brain by spectroscopic imaging and immunohistochemistry, Analyst, volume 143, pages 850-857, article no. 4, DOI:10.1039/c7an01747b.

2017

• Hermes M, Nallala J, Huot L, Tomko J, Junaid S, Tidemand-Lichtenberg P, Pedersen C, Stone N. (2017) Towards rapid high-resolution mid-ir imaging for molecular spectral histopathological diagnosis of oesophageal cancers, Optics InfoBase Conference Papers, volume Part F81-EQEC 2017.
• Kastl L, Kemper B, Lloyd GR, Nallala J, Stone N, Naranjo V, Penaranda F, Schnekenburger J. (2017) Mid-infrared spectroscopy in skin cancer cell type identification, Optics InfoBase Conference Papers, volume Part F61-ECBO 2017, DOI:10.1117/12.2287263.
• Peñaranda F, Naranjo V, Verdú-Monedero R, Lloyd GR, Nallala J, Stone N. (2017) Multimodal registration of optical microscopic and infrared spectroscopic images from different tissue sections: An application to colon cancer, Digital Signal Processing: A Review Journal, volume 68, pages 1-15, DOI:10.1016/j.dsp.2017.04.014.
• Farries M, Ward J, Lindsay I, Nallala J, Moselund P. (2017) Fast hyper-spectral imaging of cytological samples in the mid-infrared wavelength region, Progress in Biomedical Optics and Imaging - Proceedings of SPIE, volume 10060, DOI:10.1117/12.2250811.
• Kastl L, Kemper B, Lloyd GR, Nallala J, Stone N, Naranjo V, Penaranda F, Schnekenburger J. (2017) Performance of mid infrared spectroscopy in skin cancer cell type identification, Progress in Biomedical Optics and Imaging - Proceedings of SPIE, volume 10060, DOI:10.1117/12.2253314.
• Old OJ, Lloyd GR, Nallala J, Isabelle M, Almond LM, Shepherd NA, Kendall CA, Shore AC, Barr H, Stone N. (2017) Rapid infrared mapping for highly accurate automated histology in Barrett's oesophagus, ANALYST, volume 142, no. 8, pages 1227-1234, DOI:10.1039/c6an01871h. [PDF]
• Old OJ, Lloyd GR, Nallala J, Isabelle M, Almond LM, Shepherd NA, Kendall CA, Shore AC, Barr H, Stone N. (2017) Rapid infrared mapping for highly accurate automated histology in Barrett's oesophagus, Analyst, volume 142, no. 8, pages 1227-1234, DOI:10.1039/c6an01871h. [PDF]

2016

• Stone N, Nallala J, Lloyd GR. (2016) Identification of gastrointestinal cancers using rapid mid-IR spectral imaging, SPIE Newsroom, DOI:10.1117/2.1201605.006463.
• Peñaranda F, Naranjo V, Kastl L, Kemper B, Lloyd GR, Nallala J, Stone N, Schnekenburger J. (2016) Multivariate classification of Fourier transform infrared hyperspectral images of skin cancer cells, European Signal Processing Conference, volume 2016-November, pages 1328-1332, DOI:10.1109/EUSIPCO.2016.7760464.
• Kastl L, Kemper B, Lloyd GR, Nallala J, Stone N, Naranjo V, Penaranda F, Schnekenburger J. (2016) Potential of mid IR spectroscopy in the rapid label free identification of skin malignancies, OPTICAL BIOPSY XIV: TOWARD REAL-TIME SPECTROSCOPIC IMAGING AND DIAGNOSIS, volume 9703, DOI:10.1117/12.2208897. [PDF]
• Nallala J, Lloyd GR, Kendall C, Barr H, Shepherd N, Stone N. (2016) Identification of GI cancers utilising rapid mid-infrared spectral imaging, OPTICAL BIOPSY XIV: TOWARD REAL-TIME SPECTROSCOPIC IMAGING AND DIAGNOSIS, volume 9703, DOI:10.1117/12.2209363. [PDF]
• Penaranda F, Naranjo V, Verdu R, Lloyd GR, Nallala J, Stone N. (2016) A two-step framework for the registration of HE stained and FTIR images, OPTICAL BIOPSY XIV: TOWARD REAL-TIME SPECTROSCOPIC IMAGING AND DIAGNOSIS, volume 9703, DOI:10.1117/12.2208869. [PDF]
• Lindsay ID, Valle S, Ward J, Stevens G, Farries M, Huot L, Brooks C, Moselund PM, Vinella RM, Abdalla M. (2016) Towards supercontinuum-driven hyperspectral microscopy in the mid-infrared, OPTICAL BIOPSY XIV: TOWARD REAL-TIME SPECTROSCOPIC IMAGING AND DIAGNOSIS, volume 9703, DOI:10.1117/12.2210836. [PDF]
• Seddon AB, Benson TM, Sujecki S, Abdel-Moneim N, Tang Z, Furniss D, Sojka L, Stone N, Jayakrupakar N, Lloyd GR. (2016) Towards the mid-infrared optical biopsy, OPTICAL BIOPSY XIV: TOWARD REAL-TIME SPECTROSCOPIC IMAGING AND DIAGNOSIS, volume 9703, DOI:10.1117/12.2211584. [PDF]
• Lloyd GR, Nallala J, Stone N. (2016) Investigating the effect of pixel size on high spatial resolution FTIR imaging for detection of colorectal cancer, OPTICAL BIOPSY XIV: TOWARD REAL-TIME SPECTROSCOPIC IMAGING AND DIAGNOSIS, volume 9703, DOI:10.1117/12.2210844. [PDF]
• Nallala J, Lloyd GR, Shepherd N, Stone N. (2016) High-resolution FTIR imaging of colon tissues for elucidation of individual cellular and histopathological features, Analyst, volume 141, no. 2, pages 630-639, DOI:10.1039/c5an01871d. [PDF]

2015

• Griggs R, Nallala J, Lloyd G, Kendall C, Barr H, Stone N, Shepherd N. (2015) High resolution infrared spectroscopy: Reliable, rapid diagnosis of colorectal cancer in the colon, International Journal of Surgery, volume 23, DOI:10.1016/j.ijsu.2015.07.674.
• Griggs R, Nallala J, Lloyd G, Cook T, Kendall C, Barr H, Shepherd N, Stone N. (2015) HIGH RESOLUTION SPECTRAL IMAGING: NOVEL DIAGNOSTICS IN COLORECTAL CANCER, GUT, volume 64, pages A553-A554, DOI:10.1136/gutjnl-2015-309861.1214. [PDF]
• Griggs R, Nallala J, Lloyd G, Cook T, Kendall C, Barr H, Stone N, Shepherd N. (2015) EPITHELIAL MISPLACEMENT VERSUS POLYP CANCER: SHEDDING NEW LIGHT ON THE DIAGNOSTIC CONUNDRUM, GUT, volume 64, pages A553-A553, DOI:10.1136/gutjnl-2015-309861.1213. [PDF]
• Griggs RKL, Nallala J, Lloyd G, Kendall C, Barr H, Stone N, Shepherd NA. (2015) Differentiation of colonic polyp pathology using novel high resolution spectral imaging, BRITISH JOURNAL OF SURGERY, volume 102, pages 17-17. [PDF]
• Nallala J, Lloyd GR, Stone N. (2015) Evaluation of different tissue de-paraffinization procedures for infrared spectral imaging, Analyst, volume 140, no. 7, pages 2369-2375, DOI:10.1039/c4an02122c. [PDF]

2014

• Nallala J, Piot O, Diebold M-D, Gobinet C, Bouché O, Manfait M, Sockalingum GD. (2014) Infrared and Raman imaging for characterizing complex biological materials: a comparative morpho-spectroscopic study of colon tissue, Appl Spectrosc, volume 68, no. 1, pages 57-68, DOI:10.1366/13-07170. [PDF]

2013

• Nallala J, Diebold MD, Gobinet C, Bouche O, Sockalingum G-D, Piot O, Manfait M. (2013) Infrared spectral imaging: a new automated diagnostic tool for colon cancer, CANCER RESEARCH, volume 73, no. 8, DOI:10.1158/1538-7445.AM2013-733. [PDF]
• Nallala J. (2013) Label free technologies: infrared imaging applied to paraffinized tissue microarrays for colon cancer diagnosis. [PDF]
• Nallala J. (2013) Novel concepts in infrared spectral imaging as a cancer diagnostic tool. [PDF]
• Nallala J, Piot O, Diebold MD, Gobinet C, Bouché O, Manfait M, Sockalingum GD. (2013) Infrared imaging as a cancer diagnostic tool: Introducing a new concept of spectral barcodes for identifying molecular changes in colon tumors, Cytometry Part A, volume 83 A, no. 3, pages 294-300, DOI:10.1002/cyto.a.22249.
• Nallala J, Piot O, Diebold M-D, Gobinet C, Bouché O, Manfait M, Sockalingum GD. (2013) Infrared imaging as a cancer diagnostic tool: introducing a new concept of spectral barcodes for identifying molecular changes in colon tumors, Cytometry A, volume 83, no. 3, pages 294-300, DOI:10.1002/cyto.a.22249. [PDF]

2012

• Nallala J, Diebold M-D, Gobinet C, Untereiner V, Bouché O, Manfait M, Sockalingum G, Piot O. (2012) Diagnostic du cancer du côlon par histologie spectrale infrarouge, Biophotonique générale: optique & imageries pour le diagnostic dans les sciences du vivant et en médecine, Meudon : Mission Ressources et Compétences Technologiques [MRCT], 2012.
• Kotnis A, Namkung J, Kannan S, Jayakrupakar N, Park T, Sarin R, Mulherkar R. (2012) Multiple pathway-based genetic variations associated with tobacco related multiple primary neoplasms, PLoS One, volume 7, no. 1, DOI:10.1371/journal.pone.0030013. [PDF]
• Nallala J, Gobinet C, Diebold M-D, Untereiner V, Bouché O, Manfait M, Sockalingum GD, Piot O. (2012) Infrared spectral imaging as a novel approach for histopathological recognition in colon cancer diagnosis, J Biomed Opt, volume 17, no. 11, DOI:10.1117/1.JBO.17.11.116013. [PDF]

2011

• Rajender S, Francis A, Pooja S, Krupakar N, Surekha D, Reddy G, Rao DR, Rao L, Ramachandra S, Vishnupriya S. (2011) CAG repeat length polymorphism in the androgen receptor gene and breast cancer risk: Data on Indian women and survey from the world, Breast Cancer Research and Treatment, volume 127, no. 3, pages 751-760, DOI:10.1007/s10549-010-1263-7.
• Farlay D, Duclos M-E, Gineyts E, Bertholon C, Viguet-Carrin S, Nallala J, Sockalingum GD, Bertrand D, Roger T, Hartmann DJ. (2011) The ratio 1660/1690 cm(-1) measured by infrared microspectroscopy is not specific of enzymatic collagen cross-links in bone tissue, PLoS One, volume 6, no. 12, DOI:10.1371/journal.pone.0028736. [PDF]

2010

• Nallala J, Gobinet C, Piot O, Untereiner V, Diebold MD, Bouche O, Sockalingum GD, Manfait M. (2010) Spectral histopathology of paraffinised colon tissue microarrays: a new approach by infrared spectral imaging for colon cancer diagnosis, CANCER RESEARCH, volume 70, DOI:10.1158/1538-7445.AM10-2741. [PDF]

Showing 53 publications from Symplectic.